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GWAS Study

Mapping and annotating genomic loci to prioritize genes and implicate distinct polygenic adaptations for skin color.

Kim B, Kim DS, Shin JG et al.

38849341 PubMed ID
GWAS Study Type
53425 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

KB
Kim B
KD
Kim DS
SJ
Shin JG
LS
Leem S
CM
Cho M
KH
Kim H
GK
Gu KN
SJ
Seo JY
YS
You SW
MA
Martin AR
PS
Park SG
KY
Kim Y
JC
Jeong C
KN
Kang NG
WH
Won HH
Chapter II

Abstract

Summary of the research findings

Evidence for adaptation of human skin color to regional ultraviolet radiation suggests shared and distinct genetic variants across populations. However, skin color evolution and genetics in East Asians are understudied. We quantified skin color in 48,433 East Asians using image analysis and identified associated genetic variants and potential causal genes for skin color as well as their polygenic interplay with sun exposure. This genome-wide association study (GWAS) identified 12 known and 11 previously unreported loci and SNP-based heritability was 23-24%. Potential causal genes were determined through the identification of nonsynonymous variants, colocalization with gene expression in skin tissues, and expression levels in melanocytes. Genomic loci associated with pigmentation in East Asians substantially diverged from European populations, and we detected signatures of polygenic adaptation. This large GWAS for objectively quantified skin color in an East Asian population improves understanding of the genetic architecture and polygenic adaptation of skin color and prioritizes potential causal genes.

48,433 East Asian ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

53425
Total Participants
GWAS
Study Type
Yes
Replicated
4,992 East Asian ancestry individuals
Replication Participants
East Asian
Ancestry
Republic of Korea
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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