FASTQ to T2T Alignment

We support all major sequencing platforms including Illumina (NovaSeq, HiSeq, MiSeq), BGI (DNBSEQ), PacBio (HiFi, CLR), and Oxford Nanopore (MinION, PromethION). Our pipeline automatically detects the read type and applies the optimal alignment algorithm—BWA-MEM2 for short reads and minimap2 for long reads.

Processing typically takes 24-48 hours depending on file size and current queue. Whole genome sequencing files at 30x coverage usually complete within 48 hours. We'll notify you via email when your results are ready for download.

You will receive a coordinate-sorted BAM file aligned to T2T-CHM13, along with its index file (.bai). We also provide alignment statistics including mapping rate, coverage distribution, insert size metrics (for paired-end data), and quality score distributions. All files are delivered via secure download link.

This service is intended for research and ancestry purposes only. It is not designed, validated, or certified for clinical diagnostics, medical decision-making, or health-related interpretations. For clinical applications, please consult with appropriate certified laboratories and healthcare providers.