WGS (BAM/CRAM) to RAW files

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Convert WGS from Dante Labs / Nebula Genomics / Sequencing / Wegene / YSEQ to RAW format and Haplogroups Prediction

Convert your WGS results (CRAM or BAM files) from: Dante Labs, Nebula, Sequencing, YSEQ to the most RAW common formats compatible with third-party DNA websites.

You will get the following results and files:

  • RAW files compatible with all the known third-party DNA websites.
  • BAM files ready to be uploaded to YFULL.com for deep YDNA analysis.
  • MTDNA FASTA file ready to be uploaded to YFULL.com for deep MTDNA analysis.
Note:
  • If your test is a FTDNA BIGY files, you will only receive the YDNA prediction and a VCF file containing the SNPs found in the BAM/CRAM file, as this analysis only provides the YDNA data.
  • If your test is a Whole Exome Sequencing, due to its lower coverage compared to Whole Genome Sequencing (WGS), the resulting RAW files will contain fewer genotyped SNPs. Consequently, these files may not be accepted by third-party websites, and the ancestry estimates could be less accurate than a RAW file from a WGS analysis.

Required Files

To use our service, you need to provide either a BAM file or a CRAM file, depending on the format provided by your sequencing service.

You can share the required file by either:

  1. Uploading the CRAM or BAM file to Dropbox or Google Drive, and then sharing the link with us.
  2. If you tested in Nebula Genomics, provide a direct link to the file from Nebula Genomics.
Important Notes
  • MTDNA Information: The MTDNA data within Nebula Genomics’ CRAM files cannot be accurately converted into a RAW file, so the prediction from genealogy third-parties websites will not be accurate. However, the MTDNA FASTA and BAM files are correctly generated, and the MTDNA haplogroups in the MTDNA.txt file are reliably predicted.
  • INDELs: Please note that INDELs (insertions and deletions) are not accurately converted into RAW files. Therefore, any Single Nucleotide Polymorphism (SNP) representing an INDEL will be incorrect.

Dante Labs Customers

Please, send us a link to download this file:

Nebula Genomics Customers

Please, send us this link:

What files will I receive converting a WGS to RAW?

Here is the list of ready-to-use files you will receive when converting your WGS to RAW:

YDNA.TXT Contains the predicted YDNA
MTDNA.txt Contains the predicted MTDNA


RAW FILES
A RAW file compatible with the most know third-party DNA websites. Recommended for known ancestry and genealogy websites
A 2 Millions SNPs RAW file that includes the most common SNPs from various DNA testing companies. This file is only compatible with certain third-party websites. RAW file containing 2.5M SNPs. Recommended for GEDMatch, ...


MTDNA FILES
chrM.bam BAM file of your MTDNA
chrM.vcf.gz VCF file of your MTDNA
chrM.vcf.gz.tbi VCF Index file of your VCF MTDNA file
mtdna.fasta FASTA file of your MTDNA. Recommended to upload it to YFULL.com and James Lick MTDNA predictor


YDNA files. Only for Biological Men
chrY.annotated.vcf.gz VCF file of your YDNA
chrY.annotated.vcf.gz.tbi VCF Index file of your VCF YDNA file
chrY.bam BAM file of your YDNA
chrYM.bam BAM file of your YDNA and MTDNA. Recommended to upload it to YFULL.com to get matches and deeper prediction of your YDNA and MTDNA

What files will I receive if I convert a FTDNA BIGY?

If you convert a FTDNA BIGY file, you will receive a VCF file containing all the SNPs, which primarily includes YDNA data. This file will provide the specific variations in the Y chromosome, useful for tracing paternal lineage and ancestry.

How are the results delivered?

The results are delivered securely through your account, and all the data is removed once the customer confirms that they have downloaded it correctly.

LEGAL DISCLAIMER

By using our genomic data conversion service, you acknowledge and agree to the following terms and conditions:

1. PURPOSE This service is intended solely for ancestry and genealogy research purposes. It is not designed, intended, or suitable for health-related uses or medical purposes.

2. NO HEALTH PREDICTIONS We explicitly disclaim any responsibility for health predictions or interpretations made from the files provided through this service. Users are strictly prohibited from using our converted data for medical or health-related purposes.

3. DATA ACCURACY While we strive for accuracy in our conversion process, please be aware of the following limitations: - MTDNA information from Nebula Genomics' CRAM files may not be accurately converted to RAW format. - INDELs (insertions and deletions) are not accurately converted into RAW files. Any Single Nucleotide Polymorphism (SNP) representing an INDEL may be incorrect.

4. THIRD-PARTY USE The compatibility of our converted files with third-party DNA websites is provided as-is. We do not guarantee the acceptance or proper functioning of our files on all external platforms.

5. DATA PRIVACY We prioritize the security of your genetic data. All data is removed from our systems once the customer confirms successful download. However, we cannot guarantee absolute security during transmission or storage on your end.

6. NO WARRANTY This service is provided "as is" without any warranties, express or implied. We do not guarantee the completeness, reliability, or accuracy of the converted data.

7. LIMITATION OF LIABILITY We shall not be held liable for any direct, indirect, incidental, consequential, or exemplary damages resulting from your use of this service or the data provided.

8. USER RESPONSIBILITY You are solely responsible for how you use the converted data. We strongly recommend consulting with qualified professionals for any health-related concerns or interpretations of genetic data.

9. COMPLIANCE Users must comply with all applicable laws and regulations regarding the use and sharing of genetic information in their jurisdiction.

10. CHANGES TO SERVICE We reserve the right to modify, suspend, or discontinue any part of this service without prior notice.

By proceeding with our service, you indicate that you have read, understood, and agreed to these terms. If you do not agree with any part of this disclaimer, please do not use our service.