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GWAS Study

Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.

Nair RP, Duffin KC, Helms C et al.

19169254 PubMed ID
GWAS Study Type
12848 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

NR
Nair RP
DK
Duffin KC
HC
Helms C
DJ
Ding J
SP
Stuart PE
GD
Goldgar D
GJ
Gudjonsson JE
LY
Li Y
TT
Tejasvi T
FB
Feng BJ
RA
Ruether A
SS
Schreiber S
WM
Weichenthal M
GD
Gladman D
RP
Rahman P
SS
Schrodi SJ
PS
Prahalad S
GS
Guthery SL
FJ
Fischer J
LW
Liao W
KP
Kwok PY
MA
Menter A
LG
Lathrop GM
WC
Wise CA
BA
Begovich AB
VJ
Voorhees JJ
EJ
Elder JT
KG
Krueger GG
BA
Bowcock AM
AG
Abecasis GR
Chapter II

Abstract

Summary of the research findings

Psoriasis is a common immune-mediated disorder that affects the skin, nails and joints. To identify psoriasis susceptibility loci, we genotyped 438,670 SNPs in 1,409 psoriasis cases and 1,436 controls of European ancestry. We followed up 21 promising SNPs in 5,048 psoriasis cases and 5,041 controls. Our results provide strong support for the association of at least seven genetic loci and psoriasis (each with combined P < 5 x 10(-8)). Loci with confirmed association include HLA-C, three genes involved in IL-23 signaling (IL23A, IL23R, IL12B), two genes that act downstream of TNF-alpha and regulate NF-kappaB signaling (TNIP1, TNFAIP3) and two genes involved in the modulation of Th2 immune responses (IL4, IL13). Although the proteins encoded in these loci are known to interact biologically, we found no evidence for epistasis between associated SNPs. Our results expand the catalog of genetic loci implicated in psoriasis susceptibility and suggest priority targets for study in other auto-immune disorders.

1,359 European ancestry cases, 1,400 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

12848
Total Participants
GWAS
Study Type
Yes
Replicated
5,048 European ancestry cases, 5,041 European ancestry controls
Replication Participants
European
Ancestry
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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