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GWAS Study

Genome-Wide Association Study of Peripheral Arterial Disease in a Japanese Population.

Matsukura M, Ozaki K, Takahashi A et al.

26488411 PubMed ID
GWAS Study Type
23299 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

MM
Matsukura M
OK
Ozaki K
TA
Takahashi A
OY
Onouchi Y
MT
Morizono T
KH
Komai H
SH
Shigematsu H
KT
Kudo T
IY
Inoue Y
KH
Kimura H
HA
Hosaka A
SK
Shigematsu K
MT
Miyata T
WT
Watanabe T
TT
Tsunoda T
KM
Kubo M
TT
Tanaka T
Chapter II

Abstract

Summary of the research findings

Characteristics of peripheral arterial disease (PAD) are the occlusion or stenosis of multiple vessel sites caused mainly by atherosclerosis and chronic lower limb ischemia. To identify PAD susceptible loci, we conducted a genome-wide association study (GWAS) with 785 cases and 3,383 controls in a Japanese population using 431,666 single nucleotide polymorphisms (SNP). After staged analyses including a total of 3,164 cases and 20,134 controls, we identified 3 novel PAD susceptibility loci at IPO5/RAP2A, EDNRA and HDAC9 with genome wide significance (combined P = 6.8 x 10-14, 5.3 x 10-9 and 8.8 x 10-8, respectively). Fine-mapping at the IPO5/RAP2A locus revealed that rs9584669 conferred risk of PAD. Luciferase assay showed that the risk allele at this locus reduced expression levels of IPO5. To our knowledge, these are the first genetic risk factors for PAD.

785 Japanese ancestry cases, 3,383 Japanese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

23299
Total Participants
GWAS
Study Type
Yes
Replicated
2,379 Japanese ancestry cases, 16,752 Japanese ancestry controls
Replication Participants
East Asian
Ancestry
Japan
Recruitment Country
Chapter IV

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