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GWAS Study

Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.

Afshari NA, Igo RP, Morris NJ et al.

28358029 PubMed ID
GWAS Study Type
5417 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

AN
Afshari NA
IR
Igo RP
MN
Morris NJ
SD
Stambolian D
SS
Sharma S
PV
Pulagam VL
DS
Dunn S
SJ
Stamler JF
TB
Truitt BJ
RJ
Rimmler J
KA
Kuot A
CC
Croasdale CR
QX
Qin X
BK
Burdon KP
RS
Riazuddin SA
MR
Mills R
KS
Klebe S
MM
Minear MA
ZJ
Zhao J
BE
Balajonda E
RG
Rosenwasser GO
BK
Baratz KH
MV
Mootha VV
PS
Patel SV
GS
Gregory SG
BJ
Bailey-Wilson JE
PM
Price MO
PF
Price FW
CJ
Craig JE
FJ
Fingert JH
GJ
Gottsch JD
AA
Aldave AJ
KG
Klintworth GK
LJ
Lass JH
LY
Li YJ
IS
Iyengar SK
Chapter II

Abstract

Summary of the research findings

The structure of the cornea is vital to its transparency, and dystrophies that disrupt corneal organization are highly heritable. To understand the genetic aetiology of Fuchs endothelial corneal dystrophy (FECD), the most prevalent corneal disorder requiring transplantation, we conducted a genome-wide association study (GWAS) on 1,404 FECD cases and 2,564 controls of European ancestry, followed by replication and meta-analysis, for a total of 2,075 cases and 3,342 controls. We identify three novel loci meeting genome-wide significance (P<5 × 10-8): KANK4 rs79742895, LAMC1 rs3768617 and LINC00970/ATP1B1 rs1200114. We also observe an overwhelming effect of the established TCF4 locus. Interestingly, we detect differential sex-specific association at LAMC1, with greater risk in women, and TCF4, with greater risk in men. Combining GWAS results with biological evidence we expand the knowledge of common FECD loci from one to four, and provide a deeper understanding of the underlying pathogenic basis of FECD.

1,404 European ancestry cases, 2,564 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

5417
Total Participants
GWAS
Study Type
Yes
Replicated
671 European ancestry cases, 778 European ancestry controls
Replication Participants
European
Ancestry
U.S., Australia
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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