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GWAS Study

Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study.

Kim YW, Kim YJ, Cheong HS et al.

31937794 PubMed ID
GWAS Study Type
13300 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

KY
Kim YW
KY
Kim YJ
CH
Cheong HS
SY
Shiga Y
HK
Hashimoto K
SY
Song YJ
KS
Kim SH
CH
Choi HJ
NK
Nishiguchi KM
KY
Kawai Y
NM
Nagasaki M
NT
Nakazawa T
PK
Park KH
KD
Kim DM
JJ
Jeoung JW
Chapter II

Abstract

Summary of the research findings

Primary open-angle glaucoma (POAG) can develop even within normal ranges of intraocular pressure, and this type of glaucoma (so-called 'normal-tension glaucoma [NTG]') is highly prevalent in East Asia including Korea and Japan. We conducted exome chip analysis to identify low-frequency and rare variants associated with POAG from the primary cohort (309 POAG patients and 5,400 control, all Koreans). For replication, Korean (310 POAG patients and 5,612 controls) and Japanese (565 POAG patients and 1,104 controls) cohorts were further investigated by targeted genotyping. SNP rs116121322 in LRRC27 showed nominally significant association with POAG in the discovery cohort (OR = 29.85, P = 2E-06). This SNP was validated in the Korean replication cohort but only in the NTG subgroups (OR = 9.86, P = 0.007). Japanese replication cohort did not show significant association with POAG (P .00.44). However, the meta-analysis in the entire cohort revealed significant association of rs116121322 with POAG (ORcombined = 10.28, Pcombined = 1.4E-07). The LRRC27 protein expression was confirmed from human trabecular meshwork cells. For gene-based testing, METTL20 showed a significant association in POAG (Pcombined = 0.002) and in the subgroup of NTG (Pcombined = 0.02), whereas ZNF677 were significantly associated with only in the subgroup of high-tension glaucoma (Pcombined = 1.5E-06). Our findings may provide further genetic backgrounds into the pathogenesis of POAG, especially for the patients who have lower baseline intraocular pressures.

309 Korean ancestry cases, 5,400 Korean ancestry controls

Chapter III

Study Statistics

Key metrics and study information

13300
Total Participants
GWAS
Study Type
Yes
Replicated
875 East Asian ancestry cases, 6,716 East Asian ancestry controls
Replication Participants
East Asian
Ancestry
Japan, Republic of Korea
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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