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GWAS Study

Genetic susceptibility to patient-reported xerostomia among long-term oropharyngeal cancer survivors.

Aggarwal P, Hutcheson KA, Yu R et al.

35459784 PubMed ID
GWAS Study Type
352 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

AP
Aggarwal P
HK
Hutcheson KA
YR
Yu R
WJ
Wang J
FC
Fuller CD
GA
Garden AS
GR
Goepfert RP
RJ
Rigert J
MF
Mott FE
LC
Lu C
LS
Lai SY
GG
Gunn GB
CM
Chambers MS
LG
Li G
WC
Wu CC
HE
Hanna EY
SE
Sturgis EM
SS
Shete S
Chapter II

Abstract

Summary of the research findings

Genetic susceptibility for xerostomia, a common sequela of radiotherapy and chemoradiotherapy for head and neck cancer, is unknown. Therefore, to identify genetic variants associated with moderate to severe xerostomia, we conducted a GWAS of 359 long-term oropharyngeal cancer (OPC) survivors using 579,956 autosomal SNPs. Patient-reported cancer treatment-related xerostomia was assessed using the MD Anderson Symptom Inventory. Patient response was dichotomized as moderate to severe or none to mild symptoms. In our study, 39.2% of OPC survivors reported moderate to severe xerostomia. Our GWAS identified eight SNPs suggestively associated with higher risk of moderate to severe xerostomia in six genomic regions (2p13.3, rs6546481, Minor Allele (MA) = A, ANTXR1, P = 4.3 × 10-7; 5p13.2-p13.1, rs16903936, MA = G, EGFLAM, P = 5.1 × 10-6; 4q21.1, rs10518156, MA = G, SHROOM3, P = 7.1 × 10-6; 19q13.42, rs11882068, MA = G, NLRP9, P = 1.7 × 10-5; 12q24.33, rs4760542, MA = G, GLT1D1, P = 1.8 × 10-5; and 3q27.3, rs11714564, MA = G, RTP1, P = 2.9 × 10-5. Seven SNPs were associated with lower risk of moderate to severe xerostomia, of which only one mapped to specific genomic region (15q21.3, rs4776140, MA = G, LOC105370826, a ncRNA class RNA gene, P = 1.5 × 10-5). Although our small exploratory study did not reach genome-wide statistical significance, our study provides, for the first time, preliminary evidence of genetic susceptibility to xerostomia. Further studies are needed to elucidate the role of genetic susceptibility to xerostomia.

138 moderate to severe xerostomia cases, 214 none to mild xerostomia controls

Chapter III

Study Statistics

Key metrics and study information

352
Total Participants
GWAS
Study Type
No
Replicated
U.S.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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