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mtDNA Haplogroup • Maternal Lineage

H2A3

mtDNA Haplogroup H2A3

~9,000 years ago
Near East / West Asia
2 subclades
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Chapter I

The Story

The journey of mtDNA haplogroup H2A3

Origins and Evolution

H2A3 is a downstream branch of mtDNA haplogroup H2A, itself derived from haplogroup H2 within the broader H maternal lineage. Given the parent clade H2A is estimated to have originated in the Near East/West Asia during the early Holocene (~11 kya), H2A3 plausibly arose slightly later (on the order of ~9 kya) as local diversity accumulated among expanding Neolithic and post‑Neolithic maternal lineages. Like many subclades of H, H2A3 shows a pattern of low-to-moderate frequency across a broad West Eurasian range rather than a high-frequency, localized hotspot.

Subclades

H2A3 is itself a fine-scale subclade beneath H2A. At present, published and publicly available phylogenies place H2A3 as one of several terminal or near-terminal lineages within H2A; documented diversity within H2A often resolves into several H2A.x branches with limited geographic structure. Because H2A3 is relatively rare, deep substructure beneath H2A3 is either absent or poorly sampled in current datasets; future ancient and modern complete mitogenomes may reveal additional downstream branches.

Geographical Distribution

H2A3 follows the broad geographic footprint of H2A but at generally lower frequencies. It is most plausibly concentrated in parts of Europe (particularly Iberia, southern and western Europe), the Caucasus and Anatolia, with sporadic occurrences in North Africa and parts of South/Central Asia. In modern population surveys H2A3 appears only at low frequencies in many locations; in ancient DNA catalogs it is represented by a small number of samples (the database noted five aDNA occurrences), consistent with a pattern of disperse low-level presence rather than major demographic dominance.

Historical and Cultural Significance

The distribution and phylogenetic position of H2A3 are consistent with an origin connected to early Holocene Near Eastern populations and subsequent incorporation into the expanding Neolithic farmer gene pool that moved into Europe and adjacent regions. H2A3 may therefore appear in archaeological contexts tied to Neolithic farming expansions, and later in Chalcolithic and Bronze Age assemblages as populations mixed and regionalized. Its low frequency means it is rarely a defining marker for large archaeological cultures, but its presence can help trace maternal links between Anatolian/Levantine sources and downstream European or Caucasian communities.

Conclusion

H2A3 is a fine-scale maternal lineage that illustrates how many H-derived haplogroups diversified in the Near East during the early Holocene and dispersed across West Eurasia at low-to-moderate frequencies. Because it is relatively rare and sparsely sampled in ancient genomes, conclusions about precise migration routes and demographic impact remain tentative; increased sampling of full mitogenomes from understudied regions and time periods will improve resolution for H2A3's history.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 H2A3 Current ~9,000 years ago 🌾 Neolithic 9,000 years 2 8 0
2 H2A ~11,000 years ago 🌾 Neolithic 11,000 years 4 224 141
3 H2 ~18,000 years ago 🏹 Mesolithic 18,000 years 10 485 17
4 H ~25,000 years ago 🦴 Paleolithic 25,000 years 9 6,551 991
5 HV ~30,000 years ago 🦴 Paleolithic 30,000 years 10 7,905 228
6 R ~60,000 years ago 🦴 Paleolithic 60,000 years 12 10,987 57
7 N ~60,000 years ago 🦴 Paleolithic 60,000 years 15 15,452 13
8 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
9 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Siblings (3)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

Near East / West Asia

Modern Distribution

The populations where MTDNA haplogroup H2A3 is found include:

  1. Iberian populations (Spain, Portugal, including Basques)
  2. Western and Southern Europeans (France, Italy, Greece)
  3. Eastern European populations (Poland, Ukraine, Balkans)
  4. Near Eastern populations (Anatolia, Levant)
  5. Caucasus populations (Armenia, Georgia, Azerbaijan)
  6. North African populations (Maghreb)
  7. Some Central Asian and South Asian communities (lower to moderate frequencies)
  8. Jewish communities (Sephardic and Mizrahi lineages at low frequencies)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~9k years ago

Haplogroup H2A3

Your mtDNA haplogroup emerged in Near East / West Asia

Near East / West Asia
~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup H2A3

Cultural Heritage

These ancient cultures have been linked to haplogroup H2A3 based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Alföld Linear Pottery Anatolian Bronze Age British Chalcolithic Corded Ware Culture Danish Middle Neolithic Dnieper-Mariupol Early Avar Italian Bronze Age Italian Neolithic Landbo Culture Linear Pottery Culture Mesolithic Ukrainian Remedello Shahr-i Sokhta Usatove
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

5 direct carriers and 17 subclade carriers of haplogroup H2A3

22 / 22 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual RKF069 from Hungary, dated 604 CE - 641 CE
RKF069
Hungary Early Avar Period Hungary 604 CE - 641 CE Early Avar H2a3 Direct
Portrait of ancient individual ALA019 from Turkey, dated 1616 BCE - 1510 BCE
ALA019
Turkey Middle to Late Bronze Age Turkey 1616 BCE - 1510 BCE Anatolian Bronze Age H2a3 Direct
Portrait of ancient individual I2604 from United Kingdom, dated 2272 BCE - 2032 BCE
I2604
United Kingdom Chalcolithic to Early Bronze Age England 2272 BCE - 2032 BCE British Chalcolithic H2a3 Direct
Portrait of ancient individual I6695 from Czech Republic, dated 2900 BCE - 2350 BCE
I6695
Czech Republic Corded Ware Period 2900 BCE - 2350 BCE Corded Ware Culture H2a3 Direct
Portrait of ancient individual MAJ017 from Ukraine, dated 2911 BCE - 2704 BCE
MAJ017
Ukraine Usatove Culture 2911 BCE - 2704 BCE Usatove H2a3 Direct
Portrait of ancient individual I13758 from United Kingdom, dated 400 BCE - 50 BCE
I13758
United Kingdom East Yorkshire Iron Age 400 BCE - 50 BCE East Yorkshire H2a3b Downstream
Portrait of ancient individual I11034 from United Kingdom, dated 400 BCE - 50 BCE
I11034
United Kingdom East Yorkshire Iron Age 400 BCE - 50 BCE East Yorkshire H2a3b Downstream
Portrait of ancient individual I12411 from United Kingdom, dated 400 BCE - 50 BCE
I12411
United Kingdom East Yorkshire Iron Age 400 BCE - 50 BCE East Yorkshire H2a3b Downstream
Portrait of ancient individual I12413 from United Kingdom, dated 400 BCE - 50 BCE
I12413
United Kingdom East Yorkshire Iron Age 400 BCE - 50 BCE East Yorkshire H2a3b Downstream
Portrait of ancient individual I12414 from United Kingdom, dated 400 BCE - 50 BCE
I12414
United Kingdom East Yorkshire Iron Age 400 BCE - 50 BCE East Yorkshire H2a3b Downstream
Chapter VI

Carrier Distribution Map

Geographic distribution of 22 ancient DNA samples (direct and subclade carriers of H2A3)

Direct carrier Subclade carrier
Time Period Filter
All Time Periods
Showing all samples
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution by country of origin (direct and subclade carriers shown by default)

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods (direct and subclade carriers shown by default)

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.