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American journal of human geneticsAm J Hum GenetVariation in short tandem repeats is deeply structured by genetic background on the human Y chromosome.162316381623-38Eleven biallelic polymorphisms and seven short-tandem-repeat (STR) loci mapping on the nonrecombining portion of the human Y chromosome have been typed in men from northwestern Africa. Analysis of the biallelic markers, which represent probable unique events in human evolution, allowed us to characterize the stable backgrounds or haplogroups of Y chromosomes that prevail in this geographic region. Variation in the more rapidly mutating genetic markers (STRs) has been used both to estimate the time to the most recent common ancestor for STR variability within these stable backgrounds and to explore whether STR differentiation among haplogroups still retains information about their phylogeny. When analysis of molecular variance was used to study the apportionment of STR variation among both genetic backgrounds (i.e., those defined by haplogroups) and population backgrounds, we found STR variability to be clearly structured by haplogroups. More than 80% of the genetic variance was found among haplogroups, whereas only 3.72% of the genetic variation could be attributed to differences among populations-that is, genetic variability appears to be much more structured by lineage than by population. This was confirmed when two population samples from the Iberian Peninsula were added to the analysis. The deep structure of the genetic variation in old genealogical units (haplogroups) challenges a population-based perspective in the comprehension of human genome diversity. A population may be better understood as an association of lineages from a deep and population-independent gene genealogy, rather than as a complete evolutionary unit.BoschEEUnitat de Biologia Evolutiva, Facultat de Ciències de la Salut i de la Vida, Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.CalafellFFSantosF RFRPérez-LezaunAAComasDDBenchemsiNNTyler-SmithCCBertranpetitJJengJournal ArticleResearch Support, Non-U.S. Gov'tUnited StatesAm J Hum Genet03704750002-9297IMAfrica, NorthernAllelesEvolution, MolecularGene FrequencygeneticsGenetic VariationgeneticsHaplotypesgeneticsHumansMaleMicrosatellite RepeatsgeneticsPolymorphism, GeneticgeneticsReproducibility of ResultsSpainTandem Repeat SequencesgeneticsTime FactorsY Chromosomegenetics199912190200032190199912190200061ppublish10577916PMC128837310.1086/302676S0002-9297(07)63582-4Electronic-Database Information
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A Alapont
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R Sawchuk
Racimo F
Radina F
Radmanović Darko
Radović S
Rambaldi Migliore Nicola
Ramos-García P
Ramos-Madrigal Jazmin
Ramos-Muñoz J
Ramsøe AD
Ran Jingkun
Rascovan Nicolás
Rasmussen P
Rasmussen S
Rathmann H
Ray R
RB Kimura
Redfern R
Refoyo-Martínez A
Reich D
Renaud G
Renson V
Resutík B
Reyhan R
Rhodes DT
Ribeiro Maíra R
Ricardo R
Richards MB
Rick H de Leeuw
Rickards O
Rihuete-Herrada C
Ringbauer H
Ringbauer Harald
Ríos P
Risch R
Risha Smeding
Rito Teresa
Robb John E
Robert R
Roberts A
Roca de Togores Muñoz C
Röding Carolin
Rodrigo R
Rodríguez-Varela Ricardo
Roefstra J
Rohland N
Rohrlach AB
Rolfo MF
Romero A
Romeyer-Dherbey Joanna H
Ron Pinhasi
Ron R
Rootsi S
Rosa Fregel
Rosas A
Rosenberg Noah A
Rosengren A
Rovira Gomar María Luisa
Rui R
Ruter A
Rutgers LV
Rykun M
Ryosuke Kimura
S A SA
S Anthony
S Breitling
S Daly
S Harbison
S Mallick
S Micco
S Sedig
S Sirak
S Yang
S Zahir
S. A. Polyakov
Sablin M
Sachin M SM
Sacuena Putira
Salaberria Jasone
Salazar-García DC
Samadelli M
Samira S
Sandoval José R
Sankot P
Santos M
Sanz Borràs M
Sanz Tormo M
Saoirse S
Sara B. Armas-Quintana
Sarti L
Sartori A
Sascha Willuweit
Saúl Alberto Torres Orjuela
Saveliev NA
Sawafuji Rikai
Schattke C
Schier W
Schiffels S
Schiffels Stephan
Schmitt F
Schork AJ
Schroeder H
Schulz Paulsson B
Scorrano G
Scott R SR
Sczech K
Sealy Judith
Sebastián Rivas
Šefčáková A
Semino O
Sergey Grushin
Serikov YB
Serrano-Osuna Ricardo
Shah M
Shahar S
Shai Carmi
Shaw Barry
Sheridan A
Shevnina I
Shi Han
Shiro Maeda
Shnaider Svetlana
Sibel S
Sikora M
Silva AM
Silva M
Silvestrini M
Simão S
Simon Robert Myers
Singleton Andrew B
Sjögren KG
Skae S
Skochina S
Skoglund Pontus
Skorobogatov A
Slimak L
Šmolíková M
Smolyaninov RV
Smrcka V
Snow Meradeth
Soares P
Soler J
Somogyi K
Somogyvári Á
Songtao S
Sonia Archila
Sørensen L
Sørensen SA
Sousa AC
Sousa da Mota B
Spangler J
SPR Prendergast
Spriggs Matthew
Stade B
Stefanie S
Stenderup J
Stephens M
Stern A
Steven Gazal
Stewardson K
Sturrock S
Suby Jorge
Sudmant PH
Suhua S
Susana S
Svetlana S. Tur
Svetoslav Stamov
Swapan Mallick
Swapan S
Szabó G
Szécsényi-Nagy A
Szécsényi-Nagy Anna
Szeniczey T
Szmyt M
T Bonucci
T Capone
T Gao
T Kanzawa-Kiriyama
T Liu
T Marcano-Ruiz
T Soares
T Wang
T Wrzesińska
Tábita T
Tabor J
Takayuki Omori
Takayuki Shinzato
Tamás Szeniczey
Tang Jiaxin
Tankó K
Tavares Gustavo Medina
Terpolovsky, A.
Terry R
Teržan B
Teschler-Nicola M
Thierry Letellier
Thomas MG
Thomas T
Tianxing T
Tianyi T
Tianyi Wang
Tiesler Vera
Timoshenko AA
TN Macías-Herrera
Todd Lencz
Todor Chobanov
Togan İnci
Toro Moyano IJ
Torres-Martínez JF
Torres-Romero Julio César
Trapp J
Tremoleda J
Troncoso Andrés
Trudi Frost
Trzciński Dawid
Tsuneo Kakuda
Tumen T
Tunia K
Turin R
Turle R
Ugo A UA
Ujvári F
Uldum OC
Ulfeldt Hede M
Underhill PA
Unnikrishnan, D.
Usmanova ER
V Tobler
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Vadim V. Gorbunov
Valera AC
Valeria V
van der Heiden M
Vang Petersen P
Vasilyev S
Vásquez-Domínguez Emilia
Vaughn A
Veena V
Vega J
Velasco-Felipe C
Velasco-Vázquez J
Veleminsky P
Vendela K VK
Vergès JM
Verónica Alberto-Barroso
Verónica Navarrete Pendón
Veselka B
Veselovskaya EV
Vicente Mário
Víctor V
Victoria V
Vidal Encinas JM
Vigl EE
Viguera Mínguez E
Vijande Vila E
Villalba-Mouco V
Vimala T
Vinner L
Virgínia V
Viviane V
Vivó D
Vretemark M
Vytlačil Z
W Hajdinjak
W Kelso
W Perego
W Wang
Waddington C
Wåhlin S
Waldman S
Wang Chuan-Chao
Wang Tao
Wang Tianyi
Wang Xinyi
Wangdue Shargan
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Waterman A
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Wenjun W
Werge T
Werner Alt K
Wieland G
Wilkinson P
Willerslev E
Wilson L
Wilton, P. R.
Winter-Schuh Christine
Wiseman R
Włodarczak P
Workman JN
Wouter K. Vos
Wu Qian
X Li
X Ma
X Zhang
X Zou
Xiang Zhou
Xiaotian X
Xiaoyan X
Xinyue X
Xu Jierui
Xuan Yujia
Y Yang
Y Zhao
Yan Y
Yang Xiaomin
Yasawardene Surangi
Yating Zeng
Yazdi, P.
Yazhong Y
Yepiskoposyan L
Yi Y
Yichen Y
Yoan Diekmann
Yosuke Kawai
Young E
Yu J
Yu Y
Yuejiao Y
Yugovich O
Yuichi Kameda
Yury T. Mamadakov
Yusuf Can Özdemir
Zabel Susanne
Zalzala F
Zaninović J
Zenczak Michal
Zhang Ganyu
Zhang Z
Zhao L
Zheng Li
Zilhão J
Zink A
Žitňan A
Zoé Z
Zubova A
Zupanič Pajnič Irena
Zurita Camilo
The Thar Desert of Northwestern India, despite its harsh ecology, has sustained settlement of ancient crafts and pastoral communities. Their persistence provides a unique opportunity to study how migration, ecology, and culture have shaped genetic di...
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The process of the European Atlantic expansion, in its search for new territories to dominate and exploit, was consolidated in the 15th century, with the earliest setting of this expansion being carried out in the Canary Islands. The first European s...
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This study investigates the diachronic alteration of consanguinity from the Iron Age to the Early Middle Ages across Anatolia, the Balkans, and Southern Europe. To achieve this, I introduce a novel probabilistic framework, ROHClassifier, to distingui...
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During the European Neolithic transition, migrating Anatolian farmers admixed with local hunter-gatherers, coinciding with major shifts in diet, environment, and lifestyle that imposed strong selective pressures. Local ancestry inference is widely us...
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The illegal trade in elephant ivory and the legal use of mammoth ivory as a substitute continues to complicate detection and enforcement due to limitations in current identification methods. DNA-based approaches provide more definitive results compar...
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Indigenous peoples of America represent the last principal expansion of humans across the globe1, yet their genetic history remains one of the least explored2. Although these populations have inhabited the continent for thousands of years3, their evo...
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The Roman province of Dacia, located north of the Danube frontier, represented a key zone of cultural and demographic interaction during the Imperial period. However, the biological impact of Roman colonization in this region has not been characteriz...
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Frontal bone morphology is considered informative concerning phylogenetic and taxonomic affinities in hominin fossils. However, evaluating individual frontal bone features, especially macroscopically and with qualitative data, can produce contradicto...
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Over the past decade, genomic modelling has revealed a rich tapestry of admixtures shaping present-day human populations. These have largely focused on the past few thousand years, when ancestral populations are either well characterised by present-d...
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One-off events such as wars or epidemics can change the structure of populations, by encouraging the mobility or causing the death of certain categories of people. They can also lead to a demographic slump, made up for by the arrival of new migrants....
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Ancient DNA has transformed our understanding of population history, but its potential to reveal as much about human evolutionary biology has not been realized because of limited sample sizes and the difficulty of distinguishing sustained rises in al...
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The Piasts were one of the royal dynasties that shaped the political structure of medieval Europe in the 10th century CE. Despite their importance, as the founders and rulers of the early Polish kingdom, little is known about Piast origin, the condit...
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