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GWAS Study

Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.

Han JW, Zheng HF, Cui Y et al.

19838193 PubMed ID
GWAS Study Type
12454 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

HJ
Han JW
ZH
Zheng HF
CY
Cui Y
SL
Sun LD
YD
Ye DQ
HZ
Hu Z
XJ
Xu JH
CZ
Cai ZM
HW
Huang W
ZG
Zhao GP
XH
Xie HF
FH
Fang H
LQ
Lu QJ
XJ
Xu JH
LX
Li XP
PY
Pan YF
DD
Deng DQ
ZF
Zeng FQ
YZ
Ye ZZ
ZX
Zhang XY
WQ
Wang QW
HF
Hao F
ML
Ma L
ZX
Zuo XB
ZF
Zhou FS
DW
Du WH
CY
Cheng YL
YJ
Yang JQ
SS
Shen SK
LJ
Li J
SY
Sheng YJ
ZX
Zuo XX
ZW
Zhu WF
GF
Gao F
ZP
Zhang PL
GQ
Guo Q
LB
Li B
GM
Gao M
XF
Xiao FL
QC
Quan C
ZC
Zhang C
ZZ
Zhang Z
ZK
Zhu KJ
LY
Li Y
HD
Hu DY
LW
Lu WS
HJ
Huang JL
LS
Liu SX
LH
Li H
RY
Ren YQ
WZ
Wang ZX
YC
Yang CJ
WP
Wang PG
ZW
Zhou WM
LY
Lv YM
ZA
Zhang AP
ZS
Zhang SQ
LD
Lin D
LY
Li Y
LH
Low HQ
SM
Shen M
ZZ
Zhai ZF
WY
Wang Y
ZF
Zhang FY
YS
Yang S
LJ
Liu JJ
ZX
Zhang XJ
Chapter II

Abstract

Summary of the research findings

We performed a genome-wide association study (GWAS) of systemic lupus erythematosus (SLE) in a Chinese Han population by genotyping 1,047 cases and 1,205 controls using Illumina Human610-Quad BeadChips and replicating 78 SNPs in two additional cohorts (3,152 cases and 7,050 controls). We identified nine new susceptibility loci (ETS1, IKZF1, RASGRP3, SLC15A4, TNIP1, 7q11.23, 10q11.22, 11q23.3 and 16p11.2; 1.77 x 10(-25) < or = P(combined) < or = 2.77 x 10(-8)) and confirmed seven previously reported loci (BLK, IRF5, STAT4, TNFAIP3, TNFSF4, 6q21 and 22q11.21; 5.17 x 10(-42) < or = P(combined) < or = 5.18 x 10(-12)). Comparison with previous GWAS findings highlighted the genetic heterogeneity of SLE susceptibility between Chinese Han and European populations. This study not only advances our understanding of the genetic basis of SLE but also highlights the value of performing GWAS in diverse ancestral populations.

1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

12454
Total Participants
GWAS
Study Type
Yes
Replicated
3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls
Replication Participants
East Asian
Ancestry
China
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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