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GWAS Study

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.

Jostins L, Ripke S, Weersma RK et al.

23128233 PubMed ID
GWAS Study Type
77064 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

JL
Jostins L
RS
Ripke S
WR
Weersma RK
DR
Duerr RH
MD
McGovern DP
HK
Hui KY
LJ
Lee JC
SL
Schumm LP
SY
Sharma Y
AC
Anderson CA
EJ
Essers J
MM
Mitrovic M
NK
Ning K
CI
Cleynen I
TE
Theatre E
SS
Spain SL
RS
Raychaudhuri S
GP
Goyette P
WZ
Wei Z
AC
Abraham C
AJ
Achkar JP
AT
Ahmad T
AL
Amininejad L
AA
Ananthakrishnan AN
AV
Andersen V
AJ
Andrews JM
BL
Baidoo L
BT
Balschun T
BP
Bampton PA
BA
Bitton A
BG
Boucher G
BS
Brand S
BC
Büning C
CA
Cohain A
CS
Cichon S
DM
D'Amato M
DJ
De Jong D
DK
Devaney KL
DM
Dubinsky M
EC
Edwards C
ED
Ellinghaus D
FL
Ferguson LR
FD
Franchimont D
FK
Fransen K
GR
Gearry R
GM
Georges M
GC
Gieger C
GJ
Glas J
HT
Haritunians T
HA
Hart A
HC
Hawkey C
HM
Hedl M
HX
Hu X
KT
Karlsen TH
KL
Kupcinskas L
KS
Kugathasan S
LA
Latiano A
LD
Laukens D
LI
Lawrance IC
LC
Lees CW
LE
Louis E
MG
Mahy G
MJ
Mansfield J
MA
Morgan AR
MC
Mowat C
NW
Newman W
PO
Palmieri O
PC
Ponsioen CY
PU
Potocnik U
PN
Prescott NJ
RM
Regueiro M
RJ
Rotter JI
RR
Russell RK
SJ
Sanderson JD
SM
Sans M
SJ
Satsangi J
SS
Schreiber S
SL
Simms LA
SJ
Sventoraityte J
TS
Targan SR
TK
Taylor KD
TM
Tremelling M
VH
Verspaget HW
DV
De Vos M
WC
Wijmenga C
WD
Wilson DC
WJ
Winkelmann J
XR
Xavier RJ
ZS
Zeissig S
ZB
Zhang B
ZC
Zhang CK
ZH
Zhao H
SM
Silverberg MS
AV
Annese V
HH
Hakonarson H
BS
Brant SR
RG
Radford-Smith G
MC
Mathew CG
RJ
Rioux JD
SE
Schadt EE
DM
Daly MJ
FA
Franke A
PM
Parkes M
VS
Vermeire S
BJ
Barrett JC
CJ
Cho JH
Chapter II

Abstract

Summary of the research findings

Crohn's disease and ulcerative colitis, the two common forms of inflammatory bowel disease (IBD), affect over 2.5 million people of European ancestry, with rising prevalence in other populations. Genome-wide association studies and subsequent meta-analyses of these two diseases as separate phenotypes have implicated previously unsuspected mechanisms, such as autophagy, in their pathogenesis and showed that some IBD loci are shared with other inflammatory diseases. Here we expand on the knowledge of relevant pathways by undertaking a meta-analysis of Crohn's disease and ulcerative colitis genome-wide association scans, followed by extensive validation of significant findings, with a combined total of more than 75,000 cases and controls. We identify 71 new associations, for a total of 163 IBD loci, that meet genome-wide significance thresholds. Most loci contribute to both phenotypes, and both directional (consistently favouring one allele over the course of human history) and balancing (favouring the retention of both alleles within populations) selection effects are evident. Many IBD loci are also implicated in other immune-mediated disorders, most notably with ankylosing spondylitis and psoriasis. We also observe considerable overlap between susceptibility loci for IBD and mycobacterial infection. Gene co-expression network analysis emphasizes this relationship, with pathways shared between host responses to mycobacteria and those predisposing to IBD.

Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

77064
Total Participants
GWAS
Study Type
Yes
Replicated
Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls
Replication Participants
European
Ancestry
Sweden, U.S., Canada, Belgium, Germany, U.K., Norway, Australia, Slovenia, Italy, Netherlands, Spain, New Zealand, Lithuania, Denmark
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

Important Disclaimer: This review has been performed semi-automatically and is provided for informational purposes only. While we strive for accuracy, this analysis may contain errors, omissions, or misinterpretations of the original research. DNA Genics disclaims all liability for any inaccuracies, errors, or consequences arising from the use of this information. Users should independently verify all information and consult original research publications before making any decisions based on this content. This analysis is not intended as a substitute for professional scientific review or medical advice.

Analysis In Progress

Our analysis of this publication is currently being prepared. Please check back soon for comprehensive insights into the health and genetic findings discussed in this research.