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GWAS Study

Identification of <i>ROBO2</i> as a Potential Locus Associated with Inhaled Corticosteroid Response in Childhood Asthma.

Hernandez-Pacheco N, Gorenjak M, Li J et al.

34442380 PubMed ID
GWAS Study Type
339 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

HN
Hernandez-Pacheco N
GM
Gorenjak M
LJ
Li J
RK
Repnik K
VS
Vijverberg SJ
BV
Berce V
JA
Jorgensen A
KL
Karimi L
SM
Schieck M
SL
Samedy-Bates LA
TR
Tavendale R
VJ
Villar J
MS
Mukhopadhyay S
PM
Pirmohamed M
VK
Verhamme KMC
KM
Kabesch M
HD
Hawcutt DB
TS
Turner S
PC
Palmer CN
TK
Tantisira KG
BE
Burchard EG
MD
Maitland-van der Zee AH
FC
Flores C
PU
Potočnik U
PM
Pino-Yanes M
Chapter II

Abstract

Summary of the research findings

Inhaled corticosteroids (ICS) are the most common asthma controller medication. An important contribution of genetic factors in ICS response has been evidenced. Here, we aimed to identify novel genetic markers involved in ICS response in asthma. A genome-wide association study (GWAS) of the change in lung function after 6 weeks of ICS treatment was performed in 166 asthma patients from the SLOVENIA study. Patients with an improvement in lung function ≥8% were considered as ICS responders. Suggestively associated variants (p-value ≤ 5 × 10-6) were evaluated in an independent study (n = 175). Validation of the association with asthma exacerbations despite ICS use was attempted in European (n = 2681) and admixed (n = 1347) populations. Variants previously associated with ICS response were also assessed for replication. As a result, the SNP rs1166980 from the ROBO2 gene was suggestively associated with the change in lung function (OR for G allele: 7.01, 95% CI: 3.29-14.93, p = 4.61 × 10-7), although this was not validated in CAMP. ROBO2 showed gene-level evidence of replication with asthma exacerbations despite ICS use in Europeans (minimum p-value = 1.44 × 10-5), but not in admixed individuals. The association of PDE10A-T with ICS response described by a previous study was validated. This study suggests that ROBO2 could be a potential novel locus for ICS response in Europeans.

94 Slovenian ancestry cases, 72 Slovenian ancestry controls

Chapter III

Study Statistics

Key metrics and study information

339
Total Participants
GWAS
Study Type
Yes
Replicated
93 European ancestry cases, 80 European ancestry controls
Replication Participants
European
Ancestry
Slovenia
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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