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GWAS Study

Acute central nervous system toxicity during treatment of pediatric acute lymphoblastic leukemia: phenotypes, risk factors and genotypes.

Anastasopoulou S, Nielsen RL, Als-Nielsen B et al.

35354251 PubMed ID
GWAS Study Type
1124 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

AS
Anastasopoulou S
NR
Nielsen RL
AB
Als-Nielsen B
BJ
Banerjee J
EM
Eriksson MA
HM
Helenius M
HM
Heyman MM
JI
Johannsdottir IM
JO
Jonsson OG
MS
MacGregor S
MM
Mateos MK
MC
Mayoh C
MS
Mikkel S
MI
Myrberg IH
NR
Niinimäki R
SK
Schmiegelow K
TM
Taskinen M
VG
Vaitkeviciene G
WA
Warnqvist A
WB
Wolthers B
HA
Harila-Saari A
RS
Ranta S
Chapter II

Abstract

Summary of the research findings

Central nervous system (CNS) toxicity is common at diagnosis and during treatment of pediatric acute lymphoblastic leukemia (ALL). We studied CNS toxicity in 1,464 children aged 1.0-17.9 years, diagnosed with ALL and treated according to the Nordic Society of Pediatric Hematology and Oncology ALL2008 protocol. Genome-wide association studies, and a candidate single-nucleotide polymorphism (SNP; n=19) study were performed in 1,166 patients. Findings were validated in an independent Australian cohort of children with ALL (n=797) in whom two phenotypes were evaluated: diverse CNS toxicities (n=103) and methotrexate-related CNS toxicity (n=48). In total, 135/1,464 (9.2%) patients experienced CNS toxicity for a cumulative incidence of 8.7% (95% confidence interval: 7.31-10.20) at 12 months from diagnosis. Patients aged ≥10 years had a higher risk of CNS toxicity than had younger patients (16.3% vs. 7.4%; P<0.001). The most common CNS toxicities were posterior reversible encephalopathy syndrome (n=52, 43 with seizures), sinus venous thrombosis (n=28, 9 with seizures), and isolated seizures (n=16). The most significant SNP identified by the genome-wide association studies did not reach genomic significance (lowest P-value: 1.11x10-6), but several were annotated in genes regulating neuronal functions. In candidate SNP analysis, ATXN1 rs68082256, related to epilepsy, was associated with seizures in patients <10 years (P=0.01). ATXN1 rs68082256 was validated in the Australian cohort with diverse CNS toxicities (P=0.04). The role of ATXN1 as well as the novel SNP in neurotoxicity in pediatric ALL should be further explored.

67 European ancestry cases, 1,057 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

1124
Total Participants
GWAS
Study Type
Yes
Replicated
103 European ancestry cases, 537 European ancestry controls
Replication Participants
European
Ancestry
Sweden, Norway, Finland, Denmark, Lithuania, Iceland, Estonia, Australia
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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