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GWAS Study

Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.

Tanaka T, Scheet P, Giusti B et al.

19303062 PubMed ID
GWAS Study Type
3620 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

TT
Tanaka T
SP
Scheet P
GB
Giusti B
BS
Bandinelli S
PM
Piras MG
UG
Usala G
LS
Lai S
MA
Mulas A
CA
Corsi AM
VA
Vestrini A
SF
Sofi F
GA
Gori AM
AR
Abbate R
GJ
Guralnik J
SA
Singleton A
AG
Abecasis GR
SD
Schlessinger D
UM
Uda M
FL
Ferrucci L
Chapter II

Abstract

Summary of the research findings

The B vitamins are components of one-carbon metabolism (OCM) that contribute to DNA synthesis and methylation. Homocysteine, a by-product of OCM, has been associated with coronary heart disease, stroke and neurological disease. To investigate genetic factors that affect circulating vitamin B6, vitamin B12, folate and homocysteine, a genome-wide association analysis was conducted in the InCHIANTI (N = 1175), SardiNIA (N = 1115), and BLSA (N = 640) studies. The top loci were replicated in an independent sample of 687 participants in the Progetto Nutrizione study. Polymorphisms in the ALPL gene (rs4654748, p = 8.30 x 10(-18)) were associated with vitamin B6 and FUT2 (rs602662, [corrected] p = 2.83 x 10(-20)) with vitamin B12 serum levels. The association of MTHFR, a gene consistently associated with homocysteine, was confirmed in this meta-analysis. The ALPL gene likely influences the catabolism of vitamin B6 while FUT2 interferes with absorption of vitamin B12. These findings highlight mechanisms that affect vitamin B6, vitamin B12 and homocysteine serum levels.

2,934 European ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

3620
Total Participants
GWAS
Study Type
Yes
Replicated
686 European ancestry individuals
Replication Participants
European
Ancestry
Italy, U.S.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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