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GWAS Study

Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.

Ding L, Abebe T, Beyene J et al.

23829686 PubMed ID
GWAS Study Type
1581 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

DL
Ding L
AT
Abebe T
BJ
Beyene J
WR
Wilke RA
GA
Goldberg A
WJ
Woo JG
ML
Martin LJ
RM
Rothenberg ME
RM
Rao M
HG
Hershey GK
CR
Chakraborty R
MT
Mersha TB
Chapter II

Abstract

Summary of the research findings

The standard approach to determine unique or shared genetic factors across populations is to identify risk alleles in one population and investigate replication in others. However, since populations differ in DNA sequence information, allele frequencies, effect sizes, and linkage disequilibrium patterns, SNP association using a uniform stringent threshold on p values may not be reproducible across populations. Here, we developed rank-based methods to investigate shared or population-specific loci and pathways for childhood asthma across individuals of diverse ancestry. We performed genome-wide association studies on 859,790 SNPs genotyped in 527 affected offspring trios of European, African, and Hispanic ancestry using publically available asthma database in the Genotypes and Phenotypes database.

429 European ancestry affected offspring trios

Chapter III

Study Statistics

Key metrics and study information

1581
Total Participants
GWAS
Study Type
Yes
Replicated
52 African American affected offspring trios, 46 Hispanic affected offspring trios
Replication Participants
European, Hispanic or Latin American, African American or Afro-Caribbean
Ancestry
U.S.
Recruitment Country
Chapter IV

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