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GWAS Study

Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.

Papaemmanuil E, Hosking FJ, Vijayakrishnan J et al.

19684604 PubMed ID
GWAS Study Type
3305 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

PE
Papaemmanuil E
HF
Hosking FJ
VJ
Vijayakrishnan J
PA
Price A
OB
Olver B
SE
Sheridan E
KS
Kinsey SE
LT
Lightfoot T
RE
Roman E
IJ
Irving JA
AJ
Allan JM
TI
Tomlinson IP
TM
Taylor M
GM
Greaves M
HR
Houlston RS
Chapter II

Abstract

Summary of the research findings

To identify risk variants for childhood acute lymphoblastic leukemia (ALL), we conducted a genome-wide association study of two case-control series, analyzing the genotypes with respect to 291,423 tagging SNPs in a total of 907 ALL cases and 2,398 controls. We identified risk loci for ALL at 7p12.2 (IKZF1, rs4132601, odds ratio (OR) = 1.69, P = 1.20 x 10(-19)), 10q21.2 (ARID5B, rs7089424, OR = 1.65, P = 6.69 x 10(-19)) and 14q11.2 (CEBPE, rs2239633, OR = 1.34, P = 2.88 x 10(-7)). The 10q21.2 (ARID5B) risk association appears to be selective for the subset of B-cell precursor ALL with hyperdiploidy. These data show that common low-penetrance susceptibility alleles contribute to the risk of developing childhood ALL and provide new insight into disease causation of this specific hematological cancer. Notably, all three risk variants map to genes involved in transcriptional regulation and differentiation of B-cell progenitors.

907 European ancestry cases, 2,398 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

3305
Total Participants
GWAS
Study Type
No
Replicated
European
Ancestry
U.K.
Recruitment Country
Chapter IV

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