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GWAS Study

Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.

Wu C, Hu Z, He Z et al.

21642993 PubMed ID
GWAS Study Type
12218 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

WC
Wu C
HZ
Hu Z
HZ
He Z
JW
Jia W
WF
Wang F
ZY
Zhou Y
LZ
Liu Z
ZQ
Zhan Q
LY
Liu Y
YD
Yu D
ZK
Zhai K
CJ
Chang J
QY
Qiao Y
JG
Jin G
LZ
Liu Z
SY
Shen Y
GC
Guo C
FJ
Fu J
MX
Miao X
TW
Tan W
SH
Shen H
KY
Ke Y
ZY
Zeng Y
WT
Wu T
LD
Lin D
Chapter II

Abstract

Summary of the research findings

Esophageal squamous-cell carcinoma (ESCC) is one of the most prevalent cancers worldwide and occurs at a relatively high frequency in China. To identify genetic susceptibility loci for ESCC, we conducted a genome-wide association study on 2,031 individuals with ESCC (cases) and 2,044 controls of Chinese descent using 666,141 autosomal SNPs. We evaluated promising associations in an additional 6,276 cases and 6,165 controls of Chinese descent from different areas of China. We identified seven susceptibility loci on chromosomes 5q11, 6p21, 10q23, 12q24 and 21q22 (ranging from P = 7.48 × 10(-12) to P = 2.44 × 10(-31)); among these loci, 5q11, 6p21 and 21q22 were newly identified. Three variants in high linkage disequilibrium on 12q24 confer their risks to ESCC in a gene-lifestyle interaction manner, with more pronounced risk enhancement seen in tobacco and alcohol users. Furthermore, the identified variants had a cumulative association with ESCC risk (P(trend) = 7.92 × 10(-56)). These findings highlight the involvement of multiple genetic loci and gene-environment interaction in the development of esophageal cancer.

2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

12218
Total Participants
GWAS
Study Type
Yes
Replicated
3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls
Replication Participants
East Asian
Ancestry
China
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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