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GWAS Study

Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.

Pistis G, Okonkwo SU, Traglia M et al.

23935956 PubMed ID
GWAS Study Type
18428 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

PG
Pistis G
OS
Okonkwo SU
TM
Traglia M
SC
Sala C
SS
Shin SY
MC
Masciullo C
BI
Buetti I
MR
Massacane R
MM
Mangino M
TS
Thein SL
ST
Spector TD
GS
Ganesh S
PN
Pirastu N
GP
Gasparini P
SN
Soranzo N
CC
Camaschella C
HD
Hart D
GM
Green MR
TD
Toniolo D
Chapter II

Abstract

Summary of the research findings

The red blood cell related traits are highly heritable but their genetics are poorly defined. Only 5-10% of the total observed variance is explained by the genetic loci found to date, suggesting that additional loci should be searched using approaches alternative to large meta analysis. GWAS (Genome Wide Association Study) for red blood cell traits in a founder population cohort from Northern Italy identified a new locus for mean corpuscular hemoglobin concentration (MCHC) in the TAF3 gene. The association was replicated in two cohorts (rs1887582, P = 4.25E-09). TAF3 encodes a transcription cofactor that participates in core promoter recognition complex, and is involved in zebrafish and mouse erythropoiesis. We show here that TAF3 is required for transcription of the SPTA1 gene, encoding alpha spectrin, one of the proteins that link the plasma membrane to the actin cytoskeleton. Mutations in SPTA1 are responsible for hereditary spherocytosis, a monogenic disorder of MCHC, as well as for the normal MCHC level. Based on our results, we propose that TAF3 is required for normal erythropoiesis in human and that it might have a role in controlling the ratio between hemoglobin (Hb) and cell volume and in the dynamics of RBC maturation in healthy individuals. Finally, TAF3 represents a potential candidate or a modifier gene for disorders of red cell membrane.

1,664 Val Borbera (founder/genetic isolate) individuals

Chapter III

Study Statistics

Key metrics and study information

18428
Total Participants
GWAS
Study Type
Yes
Replicated
619 Friuli Venezia Giulia (founder/genetic isolate) individuals, 16,145 European ancestry individuals
Replication Participants
European
Ancestry
U.S., Iceland, Italy, Netherlands, U.K.
Recruitment Country
Chapter IV

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