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GWAS Study

Genome-wide association study of cervical cancer suggests a role for ARRDC3 gene in human papillomavirus infection.

Takeuchi F, Kukimoto I, Li Z et al.

30412241 PubMed ID
GWAS Study Type
12077 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

TF
Takeuchi F
KI
Kukimoto I
LZ
Li Z
LS
Li S
LN
Li N
HZ
Hu Z
TA
Takahashi A
IS
Inoue S
YS
Yokoi S
CJ
Chen J
HD
Hang D
KM
Kuroda M
MF
Matsuda F
MM
Mizuno M
MS
Mori S
WP
Wu P
TN
Tanaka N
MK
Matsuo K
KY
Kamatani Y
KM
Kubo M
MD
Ma D
SY
Shi Y
Chapter II

Abstract

Summary of the research findings

The development of cervical cancer is initiated by human papillomavirus (HPV) infection and involves both viral and host genetic factors. Genome-wide association studies (GWAS) of cervical cancer have identified associations in the HLA locus and two loci outside HLA, but the principal genes that control infection and pathogenesis have not been identified. In the present study, we performed GWAS of cervical cancer in East Asian populations, involving 2609 cases and 4712 controls in the discovery stage and 1461 cases and 3295 controls in the follow-up stage. We identified novel-significant associations at 5q14 with the lead single nucleotide polymorphism (SNP) rs59661306 (P = 2.4 × 10-11) and at 7p11 with the lead SNP rs7457728 (P = 1.2 × 10-8). In 5q14, the chromatin region of the GWAS-significant SNPs was found to be in contact with the promoter of the ARRDC3 (arrestin domain-containing 3) gene. In our functional studies, ARRDC3 knockdown in HeLa cells caused significant reductions in both cell growth and susceptibility to HPV16 pseudovirion infection, suggesting that ARRDC3 is involved in the infectious entry of HPV into the cell. Our study advances the understanding of host genes that are responsible for cervical cancer susceptibility and guides future research on HPV infection and cancer development.

2,609 East Asian ancestry cases, 4,712 East Asian ancestry controls

Chapter III

Study Statistics

Key metrics and study information

12077
Total Participants
GWAS
Study Type
Yes
Replicated
1,461 Han Chinese ancestry cases, 3,295 Han Chinese ancestry controls
Replication Participants
East Asian
Ancestry
China, Japan
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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