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GWAS Study

Polygenic Risk Score Improves Cataract Prediction in East Asian Population.

Hsu CC, Chuang HK, Hsiao YJ et al.

36009466 PubMed ID
GWAS Study Type
25612 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

HC
Hsu CC
CH
Chuang HK
HY
Hsiao YJ
TY
Teng YC
CP
Chiang PH
WY
Wang YJ
LT
Lin TY
TP
Tsai PH
WC
Weng CC
LT
Lin TC
HD
Hwang DK
HA
Hsieh AR
Chapter II

Abstract

Summary of the research findings

Cataracts, characterized by crystalline lens opacities in human eyes, is the leading cause of blindness globally. Due to its multifactorial complexity, the molecular mechanisms remain poorly understood. Larger cohorts of genome-wide association studies (GWAS) are needed to investigate cataracts’ genetic basis. In this study, a GWAS was performed on the largest Han population to date, analyzing a total of 7079 patients and 13,256 controls from the Taiwan Biobank (TWB) 2.0 cohort. Two cataract-associated SNPs with an adjustment of p < 1 × 10−7 in the older groups and nine SNPs with an adjustment of p < 1 × 10−6 in the younger group were identified. Except for the reported AGMO in animal models, most variations, including rs74774546 in GJA1 and rs237885 in OXTR, were not identified before this study. Furthermore, a polygenic risk score (PRS) was created for the young and old populations to identify high-risk cataract individuals, with areas under the receiver operating curve (AUROCs) of 0.829 and 0.785, respectively, after covariate adjustments. Younger individuals had 17.45 times the risk while older people had 10.97 times the risk when comparing individuals in the highest and lowest PRS quantiles. Validation analysis on an independent TWB1.0 cohort revealed AUROCs of 0.744 and 0.659.

5,120 Han Chinese ancestry cases (>=60 years old), 13,256 Han Chinese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

25612
Total Participants
GWAS
Study Type
Yes
Replicated
2,246 Han Chinese ancestry cases (>=60 years old), 4,990 Han Chinese ancestry controls
Replication Participants
East Asian
Ancestry
Taiwan
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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