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GWAS Study

Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.

Berndt SI, Camp NJ, Skibola CF et al.

26956414 PubMed ID
GWAS Study Type
18255 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

BS
Berndt SI
CN
Camp NJ
SC
Skibola CF
VJ
Vijai J
WZ
Wang Z
GJ
Gu J
NA
Nieters A
KR
Kelly RS
SK
Smedby KE
MA
Monnereau A
CW
Cozen W
CA
Cox A
WS
Wang SS
LQ
Lan Q
TL
Teras LR
MM
Machado M
YM
Yeager M
BA
Brooks-Wilson AR
HP
Hartge P
PM
Purdue MP
BB
Birmann BM
VC
Vajdic CM
CP
Cocco P
ZY
Zhang Y
GG
Giles GG
ZA
Zeleniuch-Jacquotte A
LC
Lawrence C
MR
Montalvan R
BL
Burdett L
HA
Hutchinson A
YY
Ye Y
CT
Call TG
ST
Shanafelt TD
NA
Novak AJ
KN
Kay NE
LM
Liebow M
CJ
Cunningham JM
AC
Allmer C
HH
Hjalgrim H
AH
Adami HO
MM
Melbye M
GB
Glimelius B
CE
Chang ET
GM
Glenn M
CK
Curtin K
CL
Cannon-Albright LA
DW
Diver WR
LB
Link BK
WG
Weiner GJ
CL
Conde L
BP
Bracci PM
RJ
Riby J
AD
Arnett DK
ZD
Zhi D
LJ
Leach JM
HE
Holly EA
JR
Jackson RD
TL
Tinker LF
BY
Benavente Y
SN
Sala N
CD
Casabonne D
BN
Becker N
BP
Boffetta P
BP
Brennan P
FL
Foretova L
MM
Maynadie M
MJ
McKay J
SA
Staines A
CK
Chaffee KG
AS
Achenbach SJ
VC
Vachon CM
GL
Goldin LR
SS
Strom SS
LJ
Leis JF
WJ
Weinberg JB
CN
Caporaso NE
NA
Norman AD
DR
De Roos AJ
ML
Morton LM
SR
Severson RK
RE
Riboli E
VP
Vineis P
KR
Kaaks R
MG
Masala G
WE
Weiderpass E
CM
Chirlaque MD
VR
Vermeulen RCH
TR
Travis RC
SM
Southey MC
MR
Milne RL
AD
Albanes D
VJ
Virtamo J
WS
Weinstein S
CJ
Clavel J
ZT
Zheng T
HT
Holford TR
VD
Villano DJ
MA
Maria A
SJ
Spinelli JJ
GR
Gascoyne RD
CJ
Connors JM
BK
Bertrand KA
GE
Giovannucci E
KP
Kraft P
KA
Kricker A
TJ
Turner J
EM
Ennas MG
FG
Ferri GM
ML
Miligi L
LL
Liang L
MB
Ma B
HJ
Huang J
CS
Crouch S
PJ
Park JH
CN
Chatterjee N
NK
North KE
SJ
Snowden JA
WJ
Wright J
FJ
Fraumeni JF
OK
Offit K
WX
Wu X
DS
de Sanjose S
CJ
Cerhan JR
CS
Chanock SJ
RN
Rothman N
SS
Slager SL
Chapter II

Abstract

Summary of the research findings

Chronic lymphocytic leukemia (CLL) is a common lymphoid malignancy with strong heritability. To further understand the genetic susceptibility for CLL and identify common loci associated with risk, we conducted a meta-analysis of four genome-wide association studies (GWAS) composed of 3,100 cases and 7,667 controls with follow-up replication in 1,958 cases and 5,530 controls. Here we report three new loci at 3p24.1 (rs9880772, EOMES, P=2.55 × 10(-11)), 6p25.2 (rs73718779, SERPINB6, P=1.97 × 10(-8)) and 3q28 (rs9815073, LPP, P=3.62 × 10(-8)), as well as a new independent SNP at the known 2q13 locus (rs9308731, BCL2L11, P=1.00 × 10(-11)) in the combined analysis. We find suggestive evidence (P<5 × 10(-7)) for two additional new loci at 4q24 (rs10028805, BANK1, P=7.19 × 10(-8)) and 3p22.2 (rs1274963, CSRNP1, P=2.12 × 10(-7)). Pathway analyses of new and known CLL loci consistently show a strong role for apoptosis, providing further evidence for the importance of this biological pathway in CLL susceptibility.

3,100 European ancestry cases, 7,667 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

18255
Total Participants
GWAS
Study Type
Yes
Replicated
1,958 cases, 5,530 controls
Replication Participants
European, NR, European
Ancestry
Finland, Sweden, U.S., Australia, Italy, Netherlands, Greece, Canada, Germany, U.K., Spain, France, Norway, Denmark
Recruitment Country
Chapter IV

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