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A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.

Adhikari K, Fuentes-Guajardo M, Quinto-Sánchez M et al.

27193062 PubMed ID
GWAS Study Type
6459 Participants
697 Views
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

AK
Adhikari K
FM
Fuentes-Guajardo M
QM
Quinto-Sánchez M
MJ
Mendoza-Revilla J
CC
Camilo Chacón-Duque J
AV
Acuña-Alonzo V
JC
Jaramillo C
AW
Arias W
LR
Lozano RB
PG
Pérez GM
GJ
Gómez-Valdés J
VH
Villamil-Ramírez H
HT
Hunemeier T
RV
Ramallo V
SD
Silva de Cerqueira CC
HM
Hurtado M
VV
Villegas V
GV
Granja V
GC
Gallo C
PG
Poletti G
SL
Schuler-Faccini L
SF
Salzano FM
BM
Bortolini MC
CS
Canizales-Quinteros S
CM
Cheeseman M
RJ
Rosique J
BG
Bedoya G
RF
Rothhammer F
HD
Headon D
GR
González-José R
BD
Balding D
RA
Ruiz-Linares A
Chapter II

Abstract

Summary of the research findings

We report a genome-wide association scan for facial features in ∼6,000 Latin Americans. We evaluated 14 traits on an ordinal scale and found significant association (P values<5 × 10(-8)) at single-nucleotide polymorphisms (SNPs) in four genomic regions for three nose-related traits: columella inclination (4q31), nose bridge breadth (6p21) and nose wing breadth (7p13 and 20p11). In a subsample of ∼3,000 individuals we obtained quantitative traits related to 9 of the ordinal phenotypes and, also, a measure of nasion position. Quantitative analyses confirmed the ordinal-based associations, identified SNPs in 2q12 associated to chin protrusion, and replicated the reported association of nasion position with SNPs in PAX3. Strongest association in 2q12, 4q31, 6p21 and 7p13 was observed for SNPs in the EDAR, DCHS2, RUNX2 and GLI3 genes, respectively. Associated SNPs in 20p11 extend to PAX1. Consistent with the effect of EDAR on chin protrusion, we documented alterations of mandible length in mice with modified Edar funtion.

5,958 Latin American ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

6459
Total Participants
GWAS
Study Type
Yes
Replicated
501 Latin American ancestry individuals
Replication Participants
Hispanic or Latin American
Ancestry
Brazil, Colombia, Chile, Peru, Mexico
Recruitment Country
Chapter IV

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