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GWAS Study

A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.

Choquet H, Paylakhi S, Kneeland SC et al.

29891935 PubMed ID
GWAS Study Type
240302 Participants
133 Views
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

CH
Choquet H
PS
Paylakhi S
KS
Kneeland SC
TK
Thai KK
HT
Hoffmann TJ
YJ
Yin J
KM
Kvale MN
BY
Banda Y
TN
Tolman NG
WP
Williams PA
SC
Schaefer C
MR
Melles RB
RN
Risch N
JS
John SWM
NK
Nair KS
JE
Jorgenson E
Chapter II

Abstract

Summary of the research findings

Primary open-angle glaucoma (POAG) is a leading cause of irreversible vision loss, yet much of the genetic risk remains unaccounted for, especially in African-Americans who have a higher risk for developing POAG. We conduct a multiethnic genome-wide association study (GWAS) of POAG in the GERA cohort, with replication in the UK Biobank (UKB), and vice versa, GWAS in UKB with replication in GERA. We identify 24 loci (P < 5.0 × 10-8), including 14 novel, of which 9 replicate (near FMNL2, PDE7B, TMTC2, IKZF2, CADM2, DGKG, ANKH, EXOC2, and LMX1B). Functional studies support intraocular pressure-related influences of FMNL2 and LMX1B, with certain Lmx1b mutations causing high IOP and glaucoma resembling POAG in mice. The newly identified loci increase the proportion of variance explained in each GERA race/ethnicity group, with the largest gain in African-Americans (0.5-3.1%). A meta-analysis combining GERA and UKB identifies 24 additional loci. Our study provides important insights into glaucoma pathogenesis.

3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls

Chapter III

Study Statistics

Key metrics and study information

240302
Total Participants
GWAS
Study Type
Yes
Replicated
6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls
Replication Participants
East Asian, European, Hispanic or Latin American, African unspecified, Other admixed ancestry, South Asian, African American or Afro-Caribbean
Ancestry
U.K., U.S.
Recruitment Country
Chapter IV

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