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GWAS Study

Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.

Hebbar P, Nizam R, Melhem M et al.

30108155 PubMed ID
GWAS Study Type
2529 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

HP
Hebbar P
NR
Nizam R
MM
Melhem M
AF
Alkayal F
EN
Elkum N
JS
John SE
TJ
Tuomilehto J
AO
Alsmadi O
TT
Thanaraj TA
Chapter II

Abstract

Summary of the research findings

Abnormal blood lipid levels are influenced by genetic and lifestyle/dietary factors. Although many genetic variants associated with blood lipid traits have been identified in Europeans, similar data in Middle Eastern populations are limited. We performed a genome-wide association study with Arab individuals (discovery cohort: 1,353; replication cohort: 1,176) from Kuwait to identify possible associations of genetic variants with high lipid levels. We used Illumina HumanOmniExpress BeadChip and candidate SNP genotyping in the discovery and replication phases, respectively. For association tests, we used genetic models that were based on additive and recessive modes of inheritance. High triglycerides (TGs) were recessively associated with six risk variants (rs1002487/RPS6KA1, rs11805972/LAD1) rs7761746/Or5v1, rs39745/CTTNBP2-LSM8, rs2934952/PGAP3, and rs9626773/RP11-191L9.4-CERK) at genome-wide significance (P  6.12E-09), and another six variants (rs10873925/ST6GALNAC5, rs4663379/SPP2-ARL4C, rs10033119/NPY1R, rs17709449/LINC00911-FLRT2, rs11654954/CDK12-NEUROD2, and rs9972882/STARD3) were associated at borderline significance (P  5.0E-08). High TG was also additively associated with rs11654954. All of the 12 identified markers are novel and are harbored in runs of homozygosity. Literature evidence supports the involvement of these gene loci in lipid-related processes. This study in an Arab population augments international efforts to identify genetic regulation of lipid traits.

1,353 Kuwaiti ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

2529
Total Participants
GWAS
Study Type
Yes
Replicated
1,176 Kuwaiti ancestry individuals
Replication Participants
Greater Middle Eastern (Middle Eastern, North African or Persian)
Ancestry
Kuwait
Recruitment Country
Chapter IV

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