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GWAS Study

NOTCH3 p.Arg1231Cys is markedly enriched in South Asians and associated with stroke.

Rodriguez-Flores JL, Khalid S, Parikshak N et al.

39271666 PubMed ID
GWAS Study Type
28135 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

RJ
Rodriguez-Flores JL
KS
Khalid S
PN
Parikshak N
RA
Rasheed A
YB
Ye B
KM
Kapoor M
BJ
Backman J
SF
Sepehrband F
GS
Gioia SAD
GS
Gelfman S
DT
De T
BN
Banerjee N
SD
Sharma D
MH
Martinez H
CS
Castaneda S
DD
D'Ambrosio D
ZX
Zhang XA
XP
Xun P
TE
Tsai E
TI
Tsai IC
KM
Khan MZ
JM
Jahanzaib M
MM
Mian MR
LM
Liaqat MB
MK
Mahmood K
ST
Salam TU
HM
Hussain M
IJ
Iqbal J
AF
Aslam F
CM
Cantor MN
TG
Tzoneva G
OJ
Overton J
MJ
Marchini J
RJ
Reid JG
BA
Baras A
VN
Verweij N
LL
Lotta LA
CG
Coppola G
KK
Karalis K
EA
Economides A
FS
Fazio S
LW
Liedtke W
DJ
Danesh J
KA
Kamal A
FP
Frossard P
CT
Coleman T
SA
Shuldiner AR
SD
Saleheen D
Chapter II

Abstract

Summary of the research findings

The genetic factors of stroke in South Asians are largely unexplored. Exome-wide sequencing and association analysis (ExWAS) in 75 K Pakistanis identified NM_000435.3(NOTCH3):c.3691 C > T, encoding the missense amino acid substitution p.Arg1231Cys, enriched in South Asians (alternate allele frequency = 0.58% compared to 0.019% in Western Europeans), and associated with subcortical hemorrhagic stroke [odds ratio (OR) = 3.39, 95% confidence interval (CI) = [2.26, 5.10], p = 3.87 × 10-9), and all strokes (OR [CI] = 2.30 [1.77, 3.01], p = 7.79 × 10-10). NOTCH3 p.Arg231Cys was strongly associated with white matter hyperintensity on MRI in United Kingdom Biobank (UKB) participants (effect [95% CI] in SD units = 1.1 [0.61, 1.5], p = 3.0 × 10-6). The variant is attributable for approximately 2.0% of hemorrhagic strokes and 1.1% of all strokes in South Asians. These findings highlight the value of diversity in genetic studies and have major implications for genomic medicine and therapeutic development in South Asian populations.

1,533 Pakistani ancestry cases, 26,602 Pakistani ancestry controls

Chapter III

Study Statistics

Key metrics and study information

28135
Total Participants
GWAS
Study Type
Yes
Replicated
160 Pakistani ancestry cases, 30,239 Pakistani ancestry controls
Replication Participants
South Asian
Ancestry
Pakistan
Recruitment Country
Chapter IV

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