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mtDNA Haplogroup • Maternal Lineage

F1C

mtDNA Haplogroup F1C

~12,000 years ago
Southern China / Southeast Asia
2 subclades
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Chapter I

The Story

The journey of mtDNA haplogroup F1C

Origins and Evolution

mtDNA haplogroup F1C is a subclade within the broader haplogroup F1, itself nested in haplogroup F which is widely distributed across East and Southeast Asia. Based on phylogenetic placement and comparisons with coalescence estimates for related F lineages, F1C most plausibly arose in southern China or mainland Southeast Asia during the Late Pleistocene to early Holocene (roughly ~12 kya, with uncertainty). The lineage likely diversified locally and later participated in regional demographic events in the Holocene.

Subclades

The internal structure of F1C includes several downstream branches (often labeled in databases as F1C1, F1C2, etc.), though many of these subclades are relatively rare and under-sampled in published datasets. Where present, these downstream lineages can display localized patterns consistent with founder effects and recent population expansions (for example, within island Southeast Asia or particular ethnolinguistic groups). Ongoing sequencing and phylogeographic work continues to refine the topology and age estimates of F1C subclades.

Geographical Distribution

F1C is most commonly observed at moderate frequencies in southern China and mainland Southeast Asia, and at lower frequencies across island Southeast Asia and parts of east Asia. The haplogroup occurs in a range of populations including southern Han groups, Tai-Kadai and Austroasiatic-speaking communities, as well as Austronesian-speaking populations in Taiwan and the Philippines. Occasional low-frequency records in Japan and the Korean peninsula likely reflect historical gene flow from mainland East Asia.

Historical and Cultural Significance

Although not as ubiquitous as some other maternal lineages, F1C appears to have played a role in Neolithic demographic processes in East and Southeast Asia. The timing and distribution are consistent with expansions of early Holocene foragers and the later spread of farming in southern China and mainland Southeast Asia. F1C also appears in contexts associated with the Austronesian expansion, where it co-occurs with other maternal markers (for example B4-derived lineages) that trace maritime dispersals into Island Southeast Asia and the Pacific. Because many archaeological cultures in this region are linked to complex mixtures of indigenous hunter-gatherers and incoming farmers, F1C's presence contributes to the maternal signatures of these blended demographic histories.

Conclusion

mtDNA F1C is a regional East/Southeast Asian maternal lineage with a probable origin in southern China or adjacent Southeast Asia in the early Holocene. It is informative for studies of peopling and postglacial demographic change in the region, including the Neolithic transition and Austronesian-associated dispersals, but finer-scale interpretation awaits denser sampling and full mitogenome resolution across understudied groups.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 F1C Current ~12,000 years ago 🌾 Neolithic 12,000 years 2 6 0
2 F1A'C'F 2 17 0
3 F1 ~25,000 years ago 🦴 Paleolithic 25,000 years 2 119 10
4 F ~28,000 years ago 🦴 Paleolithic 28,000 years 4 210 6
5 R9 ~40,000 years ago 🦴 Paleolithic 40,000 years 3 225 0
6 R ~55,000 years ago 🦴 Paleolithic 55,000 years 17 17,854 57
7 NA 1 17,854 0
8 N ~60,000 years ago 🦴 Paleolithic 60,000 years 16 20,371 13
9 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 7 23,542 6
10 L3'4 2 23,581 0
11 L3'4'6 2 23,584 0
12 L2'3'4'6 2 24,475 0
13 L2'3'4'5'6'7 2 24,488 0
14 L1'2'3'4'5'6'7 2 24,903 0
15 L ~160,000 years ago 🦴 Paleolithic 160,000 years 2 25,205 5

Siblings (1)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

Southern China / Southeast Asia

Modern Distribution

The populations where mtDNA haplogroup F1C is found include:

  1. Southern Han Chinese populations
  2. Tai-Kadai speaking groups (e.g., in Thailand and Laos)
  3. Austroasiatic-speaking populations (e.g., in Vietnam and Cambodia)
  4. Taiwanese indigenous (Austronesian-speaking) groups
  5. Philippine Austronesian-speaking populations
  6. Malay/Indonesian populations (island Southeast Asia)
  7. Low-frequency occurrences in Japan
  8. Low-frequency occurrences in Korean populations
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~12k years ago

Haplogroup F1C

Your mtDNA haplogroup emerged in Southern China / Southeast Asia

Southern China / Southeast Asia
~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup F1C

Cultural Heritage

These ancient cultures have been linked to haplogroup F1C based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Early Iron Age Culture Kangyu Culture Kurma Culture Late Medieval Mongolian Upper Yellow River Culture Ust-Belaya Culture Vietnamese Neolithic Yellow River Culture
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

12 subclade carriers of haplogroup F1C (no exact F1C samples sequenced yet)

12 / 12 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual S40 from Nepal, dated 200 CE - 700 CE
S40
Nepal Samdzong 1500BP 200 CE - 700 CE Samdzong Culture F1c1a1a Downstream
Portrait of ancient individual S40 from Nepal, dated 200 CE - 700 CE
S40
Nepal Iron Age Tibet 200 CE - 700 CE F1c1a1a Downstream
Portrait of ancient individual S36 from Nepal, dated 350 CE - 1000 CE
S36
Nepal Mustang Samdzong Middle Kingdoms 350 CE - 1000 CE Samdzong Culture F1c1a1 Downstream
Portrait of ancient individual C1705 from China, dated 368 BCE - 173 BCE
C1705
China Iron Age Kalatasi, Xinjiang, China 368 BCE - 173 BCE Kalatasi Culture F1c1a1 Downstream
Portrait of ancient individual TUM001 from Mongolia, dated 500 CE - 900 CE
TUM001
Mongolia Early Medieval Bulgan, Mongolia 500 CE - 900 CE Early Medieval Mongolian F1c1a1 Downstream
Portrait of ancient individual C5189 from China, dated 660 CE - 774 CE
C5189
China Tibetan Plateau Dama (644 CE) 660 CE - 774 CE Dama Culture F1c1a1a Downstream
Portrait of ancient individual KM4 from Nepal, dated 800 BCE - 1 BCE
KM4
Nepal Late Iron Age Nepal 800 BCE - 1 BCE Late Iron Age Culture F1c1a1a Downstream
Portrait of ancient individual KS8 from Nepal, dated 800 BCE - 1 BCE
KS8
Nepal Late Iron Age Nepal 800 BCE - 1 BCE Late Iron Age Culture F1c1a1a Downstream
Portrait of ancient individual M295 from Nepal, dated 800 BCE - 150 CE
M295
Nepal Late Iron Age to Early Middle Kingdoms Mebrak, Mustang, Nepal 800 BCE - 150 CE Mebrak Culture F1c1a1a Downstream
Portrait of ancient individual M4580 from Nepal, dated 800 BCE - 150 CE
M4580
Nepal Late Iron Age to Early Middle Kingdoms Mebrak, Mustang, Nepal 800 BCE - 150 CE Mebrak Culture F1c1a1a Downstream
Chapter VI

Carrier Distribution Map

Geographic distribution of 12 ancient DNA samples (direct and subclade carriers of F1C)

Subclade carrier
Time Period Filter
All Time Periods
Showing all samples
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution by country of origin (direct and subclade carriers shown by default)

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods (direct and subclade carriers shown by default)

Data

Data & Provenance

Source information and data quality

Last Updated 2026-06-14
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.