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POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans

Raghavan M, Steinrücken M, Harris K et al.

26198033 PubMed ID
101 Authors
08/21/2015 Published
57 Samples
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

RM
Raghavan M
SM
Steinrücken M
HK
Harris K
SS
Schiffels S
RS
Rasmussen S
DM
DeGiorgio M
AA
Albrechtsen A
VC
Valdiosera C
ÁM
Ávila-Arcos MC
MA
Malaspinas AS
EA
Eriksson A
MI
Moltke I
MM
Metspalu M
HJ
Homburger JR
WJ
Wall J
CO
Cornejo OE
MJ
Moreno-Mayar JV
KT
Korneliussen TS
PT
Pierre T
RM
Rasmussen M
CP
Campos PF
DB
de Barros Damgaard P
AM
Allentoft ME
LJ
Lindo J
ME
Metspalu E
RR
Rodríguez-Varela R
MJ
Mansilla J
HC
Henrickson C
SA
Seguin-Orlando A
MH
Malmström H
ST
Stafford T
SS
Shringarpure SS
MA
Moreno-Estrada A
KM
Karmin M
TK
Tambets K
BA
Bergström A
XY
Xue Y
WV
Warmuth V
FA
Friend AD
SJ
Singarayer J
VP
Valdes P
BF
Balloux F
LI
Leboreiro I
VJ
Vera JL
RH
Rangel-Villalobos H
PD
Pettener D
LD
Luiselli D
DL
Davis LG
HE
Heyer E
ZC
Zollikofer CPE
PD
Ponce de León MS
SC
Smith CI
GV
Grimes V
PK
Pike KA
DM
Deal M
FB
Fuller BT
AB
Arriaza B
SV
Standen V
LM
Luz MF
RF
Ricaut F
GN
Guidon N
OL
Osipova L
VM
Voevoda MI
PO
Posukh OL
BO
Balanovsky O
LM
Lavryashina M
BY
Bogunov Y
KE
Khusnutdinova E
GM
Gubina M
BE
Balanovska E
FS
Fedorova S
LS
Litvinov S
MB
Malyarchuk B
DM
Derenko M
MM
Mosher MJ
AD
Archer D
CJ
Cybulski J
PB
Petzelt B
MJ
Mitchell J
WR
Worl R
NP
Norman PJ
PP
Parham P
KB
Kemp BM
KT
Kivisild T
TC
Tyler-Smith C
SM
Sandhu MS
CM
Crawford M
VR
Villems R
SD
Smith DG
WM
Waters MR
GT
Goebel T
JJ
Johnson JR
MR
Malhi RS
JM
Jakobsson M
MD
Meltzer DJ
MA
Manica A
DR
Durbin R
BC
Bustamante CD
SY
Song YS
NR
Nielsen R
WE
Willerslev E
Chapter II

Abstract

Summary of the research findings

How and when the Americas were populated remains contentious. Using ancient and modern genome-wide data, we found that the ancestors of all present-day Native Americans, including Athabascans and Amerindians, entered the Americas as a single migration wave from Siberia no earlier than 23 thousand years ago (ka) and after no more than an 8000-year isolation period in Beringia. After their arrival to the Americas, ancestral Native Americans diversified into two basal genetic branches around 13 ka, one that is now dispersed across North and South America and the other restricted to North America. Subsequent gene flow resulted in some Native Americans sharing ancestry with present-day East Asians (including Siberians) and, more distantly, Australo-Melanesians. Putative "Paleoamerican" relict populations, including the historical Mexican Pericúes and South American Fuego-Patagonians, are not directly related to modern Australo-Melanesians as suggested by the Paleoamerican Model.

Chapter III

Ancient DNA Samples

57 ancient DNA samples referenced in this publication

57 Samples
Sample ID Date/Era Country Locality Sex mtDNA Y-DNA
Yaghan890 1800 CE Argentina Beagle Channel. Tierra del Fuego M D4h3a Q-L53
Yaghan894 1800 CE Argentina Beagle Channel. Tierra del Fuego F D4h3a
Yaghan895 1800 CE Argentina Beagle Channel. Tierra del Fuego F C1b
MA572 1800 CE Argentina Tierra del Fuego. Strait of Magellan F D4h3a
MA575 1800 CE Argentina Tierra del Fuego. Strait of Magellan M C1b
MA577 1800 CE Argentina Tierra del Fuego. Strait of Magellan M D1g5 Q-M902
Yaghan895 1800 CE Argentina Beagle Channel. Tierra del Fuego F C1b
Yaghan894 1800 CE Argentina Beagle Channel. Tierra del Fuego F D4h3a
Yaghan890 1800 CE Argentina Beagle Channel. Tierra del Fuego M D4h3a Q-L53
MA572 1800 CE Argentina Tierra del Fuego. Strait of Magellan F D4h3a
MA575 1800 CE Argentina Tierra del Fuego. Strait of Magellan M C1b
MA577 1800 CE Argentina Tierra del Fuego. Strait of Magellan M D1g5 Q-M902
Enoque65 1681 BCE Brazil Toca do Enoque Cave. Serra da Capivara. Piaui M A2e Q-CTS11969
Enoque65 1681 BCE Brazil Toca do Enoque Cave. Serra da Capivara. Piaui M A2e Q-CTS11969
MARC1492 1231 CE Canada Old Mission Point. Restigouche River. Atholville. prehistory Tjigog. New Brunswick M A2-a
XVII-B-939 4678 BCE Canada Lucy Islands. British Columbia. Chatham Sound M D4h3a7
XVII-B-939 4678 BCE Canada Lucy Islands. British Columbia. Chatham Sound M D4h3a7
MARC1492 1231 CE Canada Old Mission Point. Restigouche River. Atholville. prehistory Tjigog. New Brunswick M A2-a
Tsimshian 2000 CE Canada M
AM71 1800 CE Chile Strait of Magellan F D4h3a
Chinchorroi15 4354 BCE Chile Arica. Maderas. Enco C2 M A2 CT-M168
AM66 1800 CE Chile Strait of Magellan M D4h3a P-M45
AM72 1800 CE Chile Strait of Magellan F D4h3a
AM73 1800 CE Chile Strait of Magellan F D1g
AM74 1800 CE Chile Strait of Magellan M D4h3a Q-L54
Chinchorroi15 4354 BCE Chile Arica. Maderas. Enco C2 M A2 CT-M168
AM72 1800 CE Chile Strait of Magellan F D4h3a
AM74 1800 CE Chile Strait of Magellan M D4h3a Q-L54
AM71 1800 CE Chile Strait of Magellan F D4h3a
AM66 1800 CE Chile Strait of Magellan M D4h3a P-M45
AM73 1800 CE Chile Strait of Magellan F D1g
BC23 1200 CE Mexico Piedra Gorda. Las Palmas culture M B2g1
BC25 1200 CE Mexico Piedra Gorda. Las Palmas culture M CZ
BC27 1200 CE Mexico Piedra Gorda. Las Palmas culture M B2g1 Q-L53
BC28 1200 CE Mexico Piedra Gorda. Las Palmas culture M C1c1 P-M45
BC29 1200 CE Mexico Piedra Gorda. Las Palmas culture M CZ Q-CTS10359
BC30 1200 CE Mexico Piedra Gorda. Las Palmas culture M B2g1 Q-CTS10359
MOM6 4000 BCE Mexico Sierra Tarahumara M C1b Q-CTS10359
HU103 2000 CE Mexico F
BC27 1200 CE Mexico Piedra Gorda. Las Palmas culture M B2g1 Q-L53
BC23 1200 CE Mexico Piedra Gorda. Las Palmas culture M B2g1
BC28 1200 CE Mexico Piedra Gorda. Las Palmas culture M C1c1 P-M45
BC25 1200 CE Mexico Piedra Gorda. Las Palmas culture M CZ
BC30 1200 CE Mexico Piedra Gorda. Las Palmas culture M B2g1 Q-CTS10359
BC29 1200 CE Mexico Piedra Gorda. Las Palmas culture M CZ Q-CTS10359
MOM6 4000 BCE Mexico Sierra Tarahumara M C1b Q-CTS10359
F9 4000 BCE Mexico Sierra Tarahumara M C CT-M168
TA6 2000 CE Peru M
MA1 22621 BCE Russia Mal'ta M R-M207
AfontovaGora2 15001 BCE Russia Afontova Gora M Q-NGQ11
AfontovaGora2 15001 BCE Russia Afontova Gora M Q-NGQ11
MA1 22621 BCE Russia Mal'ta M R-M207
Bur1 2000 CE Russia Siberia M
Bur2 2000 CE Russia Siberia M
Kor1 2000 CE Russia Siberia F
Kor2 2000 CE Russia Voyampolka M
Y2040 2000 CE Venezuela M
Chapter IV

Analysis

Comprehensive review of ancestry and genetic findings

Important Disclaimer: This review has been performed semi-automatically and is provided for informational purposes only. While we strive for accuracy, this analysis may contain errors, omissions, or misinterpretations of the original research. DNA Genics disclaims all liability for any inaccuracies, errors, or consequences arising from the use of this information. Users should independently verify all information and consult original research publications before making any decisions based on this content. This analysis is not intended as a substitute for professional scientific review or medical advice.

Summary

Key Findings

Ancestry Insights

Traits Analysis

Historical Context

Scientific Assessment